FASTQ_QUALITY_TRIMMER(1)

NAME
fastq_quality_trimmer - Filters sequences based on quality

DESCRIPTION
usage: fastq_quality_trimmer [-h] [-v] [-t N] [-l N] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.13.1 by A. Gordon (gordon@cshl.edu)

[-h]
    = This helpful help screen.

[-t N]
    = Quality threshold - nucleotides with lower

    quality will be trimmed (from the end of the sequence).

[-l N]
    = Minimum length - sequences shorter than this (after trimming)

    will be discarded. Default = 0 = no minimum length.

[-z]
    = Compress output with GZIP.

[-i INFILE]
    = FASTQ input file. default is STDIN.

    [-o OUTFILE] = FASTQ output file. default is STDOUT. [-v] = Verbose - report number of sequences.

If [-o] is specified,
    report will be printed to STDOUT.

    If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.